A new Elsevier book on its way- "AGO-driven Non-Coding RNAs: Codes to Decode the Therapeutics of Diseases" Publisher: Elsevier, United States.

PUBLICATIONS

Books

AGO-driven Non-Coding RNAs: Codes to Decode the Therapeutics of Diseases, Mallick B (2018) Elsevier, United States. ISBN-9780128156698 (Paperback). [In production]

Regulatory RNAs: Basics, Methods and Applications, Mallick/Ghosh (2012) Springer-Verlag, Heidelberg. ISBN-978-3-642-22516-1 (Hardcover).

Bioinformatics: Principles and Applications, Ghosh/Mallick (2008) Oxford University Press. (First Print: 2008; Second Print: 2009; Third Print: 2012). ISBN-9780195692303.

Book Chapters
Mallick B et al. Renaissance of regulatory RNAs. In Ghosh/Mallick B (Eds.) Regulatory RNAs: Basics, Methods and Applications, Springer-Verlag, Heidelberg, 2012.

Journal Articles

Sahu M, and Mallick B (2018) Modulation of specific cell cycle phases in human embryonic stem cells by lncRNA RNA decoys. J Mol Recognit.  DOI: 10.1002/jmr.2763 [In Press].

 

Yadav KK, Arakha M, Das B, Mallick B, and Jha S (2018) Preferential binding to zinc oxide nanoparticle interface inhibits lysozyme fibrillation and cytotoxicity. Int J Biol Macromol. 116: 955-965.  

 

Swain A, and Mallick B (2018) miRNA-mediated ‘tug-of-war’ model reveals ceRNA propensity of genes in cancers. Molecular Oncology. 12(6): 855-868.  [Appeared on Journal Cover]

 

Sahu M, and Mallick B (2018) Deciphering synergistic regulatory networks of microRNAs in hESCs and Fibroblasts. Int J Biol Macromol.  113: 1279-1286.

 

Roy J, and Mallick B (2018) Investigating piwi-interacting RNA regulome in human Neuroblastoma. Genes, Chromosomes and Cancer. 57(7): 339-349.

 

Asthana S, Sahu M, Nayak PS, Mallick B, Jha S (2018) The smaller heparin fragments bind non-specifically through the IAPP sequence: An in silico study. Int J Biol Macromol. 113: 1092-1104. 

 

Asthana S, Mallick B, Alexandrescu AT, Jha S (2018) IAPP in type II diabetes: basic research on structure, molecular interactions, and disease mechanisms suggests potential intervention strategies. BBA Biomembranes. 1860(9): 1765-1782.

 

Singh G, Roy J, Rout P, Mallick B (2018) Genome-wide profiling of the PIWI-interacting RNA-mRNA regulatory networks in epithelial ovarian cancers. PLOS One.13(1):e0190485.

 

Arakha M, Roy J, Nayak PS, Mallick B, Jha S (2017) Zinc oxide nanoparticle energy band gap reduction triggers the oxidative stress resulting into autophagy-mediated apoptotic cell death. Free Radical Biology & Medicine. 110:42-53.

 

Dash HR, Sahu M, Mallick B, Das S (2017) Functional efficiency of MerA protein among diverse mercury resistant bacteria for efficient use in bioremediation of inorganic mercury. Biochimie. 142: 207-215.

 

Samantarrai D, and Mallick B (2017) miR-429 inhibits metastasis by targeting KIAA0101 in Soft Tissue Sarcoma. Experimental Cell Research. 357(1): 33-39.

 

Roy J, and Mallick B (2017) Altered gene expression in late-onset Alzheimer's disease due to SNPs within 3'UTR microRNA response elements. Genomics. 109: 177–185.

 

Roy J, Sarkar A, Parida S, Ghozh Z, Mallick B (2017) Small RNA sequencing revealed dysregulated piRNAs in Alzheimer's disease and their probable role in pathogenesis. Mol. BioSyst. 13: 565-576.

 

Rennie W, Kanoria S, Liu C, Mallick B, Long D, Wolenc A, Carmack CS, Lu J, Ding Y (2016) STarMirDB: a database of microRNA binding sites. RNA Biology. 13(6):554-60.

 

Sahu M, Mallick B (2016) An integrative approach predicted co-expression sub-networks regulating properties of stem cells and differentiation. Comput. Biol. Chem. 64: 250-262.

Mallick B. (2016) Decrypting the treasures of regulatory non-coding RNAs in high-throughput era. JDM Genomics & Proteomics. 7(3): e124. DOI:10.4172/2153-0602.1000e124.

Arakha M, Pal S, Samantarrai D, Panigrahi TK, Mallick BC, Pramanik K, Mallick B, Jha S (2015) Antimicrobial activity of iron oxide nanoparticle upon modulation of nanoparticle-bacteria interface. Scientific Reports. 5:14813. DOI:10.1038/srep14813.

Samantarrai D, Sahu M, Roy J, Mohanty B, Singh G, Bhushan C, Mallick B (2015) Unraveling novel TF-miRNA regulatory crosstalk in metastasis of Soft Tissue Sarcoma. Scientific Reports. 5:9742. DOI: 10.1038/srep09742.

Sengupta D, Deb M, Kar S, Shilpi A, Parbin S, Mallick B, Patra SK (2015) Epigenetic microRNA regulation of multiple chromatin functions: A perspective in cancer. Epigenetic Diagnosis & Therapy. 1(2): 81-90.

 

Ghosh Z, Mallick B (2014) Cancer stem cells and regulatory RNA crosstalk: Fostering possibilities for cancer therapies. BioScience. 64(12):1138-1149.

Liu C, Rennie WA, Mallick B, Kanoria S, Long D, Wolenc A, Carmack CS, Ding Y (2014) MicroRNA Binding Sites in C. elegans 3′UTRs. RNA Biology.  11(6): 693-701.


Das DN, Panda PK, Mukhopadhyay S, Sinha N, Mallick B, Behera B, Maiti TK, Bhutia SK (2014) Prediction and validation of apoptosis through cytochrome P450 activation by Benzo[a]pyrene. Chemico-Biological Interactions. 208:8-17.

Mallick B, Liu C, Long D, Rennie WA, Wolenc A, Carmack CS, Ding Y (2013) CLIP-based prediction of mammalian microRNA binding sites. Nucleic Acids Research. 41(14):e138.

Samantarrai D, Dash S, Chhetri B and Mallick B (2013) Genomic and epigenomic cross-talks in the regulatory landscape of miRNAs in breast cancer. Molecular Cancer Research. 11(4):315-328.

Mallick B, et al. (2012) Probing evolutionary biography of microRNAs and associated factors. Current Genomics. 13(3): 144-152. (Invited Review)

Mallick B, et al. (2011) Polymorphic microRNA target sites associated with Alzheimer’s disease. RNA Biol. 8(4): 665-673.

Mallick B, et al. (2011) MicroRNA reins in embryonic and cancer stem cells. RNA Biol. 8(3): 415 - 426.

Ghosh Z, Mallick B, Gautheret D, Malhotra P, Sachidanandam R (2009) Regulatory RNomics and gene expression [Editorial]. J. Biomedicine Biotechnology.

Mallick B, Ghosh Z, Chakrabarti J (2009) MicroRNome analysis unravels the molecular basis of SARS infection in broncho-alveolar stem cells. PLoS ONE 4(11): e7837. doi:10.1371/journal.pone.0007837.

Mallick B, Ghosh Z, Chakrabarti J (2009) Cellular versus viral microRNAs in host-virus interaction. Nucleic Acids Res. 37(4): 1035–1048.

Mallick B, Ghosh Z, Chakrabarti J (2008) MicroRNA switches in Trypanosoma brucei. Biochem. Biophys. Res. Commun. 372(3): 459-463. [Faculty of 1000 Biology recommended]

Koehrer C, Srinivasan G, Mandal D, Mallick B, Ghosh Z, Chakrabarti J, and RajBhandary UL (2008) Identification and characterization of a tRNA decoding the rare AUA codon in Haloarcula marismortui. RNA 14: 117-126. [Appeared on Cover]

Mallick B, Ghosh Z, Chakrabarti J (2008) Structural determinants characteristic to AARS subclasses and tRNA-splicing Endonuclease in Eukaryotes. J. Biomol. Struct. Dyn. 26(2): 223-234.

Ghosh Z, Chakrabarti J, Mallick B (2007) miRNomics-The bioinformatics of microRNA genes. Biochem. Biophys. Res. Commun. 363(1): 6-11.

Ghosh Z, Mallick B, Chakrabarti J (2007) RNAi Bioinformatics. Bioinformatika 2(1): 19-22.

Mallick B, Ghosh Z (2007) RNAi-Silence even can speak further beyond........... Advanced BioTech 6(4): 31-34.
 
Ghosh Z, Mallick B, Chakrabarti J, Das, S, Sahoo S, Sethi HS (2006) tRNA-isoleucine-tryptophan Composite Gene. Biochem. Biophys. Res. Commun. 339: 37-40.

Mallick B, Ghosh Z (2006) BioInformatics-The soaring tide in the ocean of Biotechnology. Advanced BioTech 5(5): 23-29.

Mallick B, Ghosh Z (2006) Bioinformatics-The Rising Sun. Ind. Sc. Cruiser 20(1): 44-50.

Mallick B, Chakrabarti J, Sahoo S, Ghosh Z and Das S (2005) Identity Elements of Archaeal tRNA. DNA Research 12(4): 235-246.

Mallick B, Chakrabarti J, Das S, Ghosh Z (2005) tRNomics: A comparative analysis of Picrophilus torridus with other archaeal thermoacidophiles. IJBB 42: 238-242.

Chakrabarti J, Mallick B, Das S, Ghosh Z, Sahoo S (2005) Algorithm for pattern recognition in nano-sized archaea. Indian J. Phys. 79(6): 559-562.

Das S, Chakrabarti J, Ghosh Z, Sahoo S, Mallick B (2005) A new measure to study phylogenetic relations in the brown algal order, Ectocarpales: The Codon Impact Parameter. Journal of Biosciences 30(5): 699-709.

CONFERENCE PUBLICATIONS

Jain N, Roy J, Das B, Mallick B (2017) Novel role of microRNA-197 as a tumor suppressor in Soft Tissue Sarcoma. International Symposium on Systems, Synthetic and Chemical Biology (SSC 2017), December 5-7, 2017, p-85.

Das B, Roy J, Jain N, Mallick B (2017) The diverse role of piR-39980 in different types of sarcoma. International Symposium on Systems, Synthetic and Chemical Biology (SSC 2017), December 5-7, 2017, p-81.

Jain N, Roy J, Das B, Mallick B (2017) Deciphering the role of miR-197 as tumor suppressor in fibrosarcoma. 9th RNA Group Meeting, October 26-28, 2017, p-55.

Das B, Roy J, Jain N, Mallick B (2017) The opposing roles of a piwi-interacting RNA in Sarcoma sub-types. 9th RNA Group Meeting, October 26-28, 2017, p-37.

Roy J, Mallick B (2016) Genome-wide profiling and functional characterization of piwi-interacting RNAs in healthy and Alzheimer's disease brain of human. NCBLSRHW, December 24-26, 2016, p-26.

Roy J, Udaseen S, Agrawal P, Mohanty BB, Singh G, Samantarrai D, Sahu M, Mallick B (2015) Combinatorial impact of SNPs & regulatory RNAs in the aetiology of late onset Alzheimer’s disease. ICMCB, February 28-March 03, 2015, p-60.

 

Singh G, Roy J, Sahu M, Samantarrai D, Mallick B (2015) Identification of germline specific Piwi-interacting small non-coding RNAs in ovarian cancer. ICMCB, February 28-March 03, 2015, p-58.

 

Priyadarsini S, Sethy R, Das S, Roy J, Samantarrai D, Singh G, Mohanty B, Sahu M, Bhushan C, Mallick B (2015) Investigating the expressional diversity of germline-specific RBPs in various malignancies. 2nd InCoFiBS, January 22-24, 2015.

 

Sethy R, Das S, Sahoo PP, Priyadarsini S, Samantarrai D, Mohanty B, Sahu M, Roy J, Singh G, Bhushan C, Mallick B (2015) Study of microRNA-mediated regulation of metastasis in fibrosarcoma. 2nd InCoFiBS, January 22-24, 2015.

 

Mohanty B, Sahu M, Kumari A, Samantarrai D, Singh S, Mallick B (2014) SNP located within 3/UTR affects oncogenesis in human breast tumor. Conference on Informatics & Integrative Biology-2014 (CIIB-2014), December 17-19, 2014, Kolkata.

 

Samantarrai D, Sahu M, Mohanty B., Singh G, Mallick B (2014) miRNA-TF co-regulatory networks in metastasis of Soft tissue sarcomas; Conference on Informatics & Integrative Biology-2014 (CIIB-2014), December 17-19, 2014, Kolkata.

 

Sahu M, Samantarrai D, Mohanty B, Singh G, Mallick B (2014) Cell cycle modulators weaving the fate of human embryonic stem cells.  2014 NextGen Genomics & Bioinformatics Technologies (2014NGBT) Conference, p-157.

 

Samantarrai D, Das D, Sahu M, Mohanty B, Mallick B (2014) Understanding crosstalk between genetic and epigenetic regulators in soft tissue sarcoma. 5th International Conference on Stem Cells and Cancer (ICSCC), 2014.

 

Samantarrai D, Das D, Mallick B (2013) RNAge: Dawn of the biological revolution. Workshop on 'Application of bioinformatics tools and techniques in modern biological research', 2013.

 

Mallick B, Ghosh Z, Chakrabarti J (2008) MicroRNA detection and target prediction in Trypanosoma brucei. Miami Winter Symposium "Regulatory RNA in Biology and Human Health"-2008, Miami, USA. Volume-19, p-96.

Ghosh Z, Mallick B, Chakrabarti J (2008) Role of microRNA regulators in trypanosomiasis. Miami Winter Symposium "Regulatory RNA in Biology and Human Health"-2008, Miami, USA. Volume 19, p-117.

Ghosh Z, Mallick B, Chakrabarti J (2008) Modulatory effects of RNAregulators on a complex system of host-parasite interaction in protozoal parasites. Complex System 2008 "Complexity of Living Systems", 2008, p-45.

Mallick B, Ghosh Z, Chakrabarti J (2007) microRNA identification in parasitic model organism. Indo-French Conference on "RNAi in Genome Control", 2007. p-59.

Ghosh Z, Mallick B, Chakrabarti J (2007) MicroRNA Regulators in Trypanosoma brucei. Indo-French Conference on "RNAi in Genome Control", 2007. p-51.

Mallick B, Ghosh Z, Chakrabarti J, Das S, Sahoo S (2007) Identity determinants for AARS and intron-splicing-endonucleases. International Conference on Chromosomes to Neurons (ICCTN), p-37.

Ghosh Z, Mallick B, Chakrabarti J, Das S, Sahoo S (2007) New Proline-tRNA gene in Methanococcus jannaschii. International Conference on Chromosomes to Neurons (ICCTN), p-58.

Mallick B, Ghosh Z, Chakrabarti J, Das S, Sahoo S (2006) Substrate identities for tRNA-splicing-Endonucleases and AARS in Eukaryotes. International Conference on Bioinformatics (InCoB 2006), p-161.

Das S, Sahoo S, Chakrabarti J, Ghosh Z, Mallick B (2006) tRNAs of nonstandard amino acids in Sulfolobus acidocaldarious. International Conference on Bioinformatics (InCoB 2006), p-274.

Sahoo S, Mallick B, Ghosh Z, Das S, Chakrabarti J (2005) tRNA-scape in archaea. 21st International tRNA Workshop, p-168.

Mallick B, Chakrabarti J, Ghosh Z, Das S (2005) Bioinformatic identification of tRNA genes. Workshop on Knowledge Discovery in Life Science-Bioinformatics Approaches, March 16-18, 2005.

Chakrabarti J, Mallick B, Ghosh Z, Sahoo S, Das S (2004) Non-canonical introns in tRNA genes of archaea. 2nd RNA Group Meeting, Dec 21-22, 2004.

NEWS PAPERS
BioInformatics-The Career Choice of 21st Century, Ghosh Z & Mallick B, The Statesman (8th Day) Published Date: Aug 27, 2006. [View]
Fretting Over Flu, Ghosh Z & Mallick B, The Statesman (8th Day) Published Date: Feb 26, 2006. [View]
Golden Grains, Ghosh Z & Mallick B, The Statesman (8th Day) Published Date: Jan 15, 2006. [View]